LUMC Clinical Ontology (LCO)

IRI:
http://purl.org/beat-covid/lco.owl
Version IRI:
http://purl.org/beat-covid/lco/v1.0/release.owl
Current version:
1.0
Authors:
http://orcid.org/0000-0003-0169-8159
http://orcid.org/0000−0002−6844−0067
http://orcid.org/0000−0003−1795−5930
Contributors:
http://orcid.org/0000−0002−1215−167X
http://orcid.org/0000−0002−8691−772X
http://orcid.org/0000−0003−3934−0072
Other visualisation:
Ontology source

Table of Content

  1. Classes
  2. Object Properties
  3. Data Properties
  4. Named Individuals
  5. Annotation Properties
  6. General Axioms
  7. Namespace Declarations

Classes

agec back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_001013

has super-classes
information content entityc
is in domain of
is related toop
is also defined as
named individual

alwaysc back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_001292

has super-classes
qualityc
is in range of
is associated withop
is disjoint with
realc, unsupportedc, positivec, negativec, neverc, phenotypec
is also defined as
named individual

assayc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000070

has super-classes
processc
is in domain of
conforms toop, has attributeop, has inputop, has outputop, has participantop, has targetop, refers toop, was informed byop
is in range of
has bioassay typeop, is realized inop, was informed byop
is disjoint with
medical screeningc, samplingc
is also defined as
named individual

attributec back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_000614

has sub-classes
qualityc, realizable entityc

beat-covid identifierc back to ToC or Class ToC

IRI: http://purl.org/beat-covid/lco#beat_covid_id

has super-classes
identifierc
is in domain of
denotesop
is in range of
refers toop
is disjoint with
clinical identifierc, sample identifierc
is also defined as
named individual

clinical identifierc back to ToC or Class ToC

IRI: http://purl.org/beat-covid/lco#clinical_id

has super-classes
identifierc
is in domain of
denotesop
is in range of
refers toop
is disjoint with
beat-covid identifierc, sample identifierc
is also defined as
named individual

datec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C25164

has super-classes
information content entityc
is in range of
has attributeop, measured atop
is also defined as
named individual

devicec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000968

has super-classes
objectc
is in range of
has participantop
is also defined as
named individual

diagnosisc back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_001331

has super-classes
information content entityc
is in domain of
is associated withop, is attribute ofop

disease severity measurementc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/CMO_0001109

has super-classes
information content entityc

donor registry identifierc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C164796

has super-classes
identifierc
is in domain of
denotesop

donor rolec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_1110087

has super-classes
rolec
is in domain of
is realized inop
is in range of
denotesop, has roleop

evaluationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C25214

has super-classes
processc

evaluation methodc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C81265

has super-classes
information content entityc
is in domain of
has scaleop, has versionop

genec back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_010035

has super-classes
material entityc
is in range of
is encoded byop
is also defined as
named individual

healthcare facilityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C21541

has super-classes
objectc
is in domain of
part ofop
is in range of
located inop
is also defined as
named individual

identifierc back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_000115

has super-classes
information content entityc
has sub-classes
beat-covid identifierc, clinical identifierc, donor registry identifierc, sample identifierc
is in domain of
denotesop, is identifier forop
is also defined as
named individual

information content entityc back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_000015

has super-classes
objectc
has sub-classes
agec, datec, diagnosisc, disease severity measurementc, evaluation methodc, identifierc, measurement datumc, measurement unit labelc, orderc, scalec, standardc, version labelc

institutec back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_000688

has super-classes
objectc
is in range of
located inop, part ofop
is also defined as
named individual

material entityc back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_000004

has super-classes
objectc
has sub-classes
genec, organc, proteinc, samplec
is in range of
has outputop, has targetop
is also defined as
named individual

measurement datumc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000109

has super-classes
information content entityc
is in domain of
has bioassay typeop, has unitop, has valuedp, measured atop, refers toop
is in range of
has inputop, has measurement valueop, has outputop
is also defined as
named individual

measurement unit labelc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000003

has super-classes
information content entityc
is in range of
has unitop
is also defined as
named individual

medical screeningc back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_001023

has super-classes
processc
is in domain of
has attributeop, has inputop, has outputop, has targetop, refers toop, was informed byop
is in range of
is realized inop
is disjoint with
assayc, samplingc

negativec back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_001211

has super-classes
qualityc
is in range of
is associated withop
is disjoint with
realc, unsupportedc, positivec, neverc, alwaysc, phenotypec
is also defined as
named individual

neverc back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_001289

has super-classes
qualityc
is in range of
is associated withop
is disjoint with
realc, unsupportedc, positivec, negativec, alwaysc, phenotypec
is also defined as
named individual

orderc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C48906

has super-classes
information content entityc
is in range of
starts duringop
is also defined as
named individual

organc back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_010003

has super-classes
material entityc
is in domain of
part ofop
is in range of
has targetop, refers toop
is disjoint with
proteinc
is also defined as
named individual

patient rolec back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_000715

has super-classes
rolec
is in domain of
is realized inop
is in range of
denotesop, has inputop, has roleop
is also defined as
named individual

personc back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_000498

has super-classes
objectc
is in domain of
has roleop
is in range of
has inputop, has targetop, is attribute ofop, part ofop
is also defined as
named individual

phenotypec back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_010056

has super-classes
qualityc
is in range of
refers toop
is disjoint with
realc, unsupportedc, positivec, negativec, neverc, alwaysc
is also defined as
named individual

positivec back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_001210

has super-classes
qualityc
is in range of
is associated withop
is disjoint with
realc, unsupportedc, negativec, neverc, alwaysc, phenotypec
is also defined as
named individual

proteinc back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_010043

has super-classes
material entityc
is in domain of
has measurement valueop, is encoded byop, part ofop
is in range of
has targetop, refers toop
is disjoint with
organc
is also defined as
named individual

protocolc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OBI_0000272

has super-classes
standardc
is in range of
conforms toop
is also defined as
named individual

qualityc back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_000005

has super-classes
attributec
has sub-classes
alwaysc, negativec, neverc, phenotypec, positivec, realc, unsupportedc
is also defined as
named individual

realc back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_000960

has super-classes
qualityc
is in range of
is associated withop
is disjoint with
unsupportedc, positivec, negativec, neverc, alwaysc, phenotypec
is also defined as
named individual

realizable entityc back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_000340

has super-classes
attributec
has sub-classes
rolec
is in domain of
datedp, refers toop
is also defined as
named individual

rolec back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_000016

has super-classes
realizable entityc
has sub-classes
donor rolec, patient rolec, subject rolec
is in domain of
is realized inop
is in range of
denotesop, has roleop
is also defined as
named individual

samplec back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_001050

has super-classes
material entityc
is in domain of
datedp, has valuedp
is in range of
has inputop, has outputop, is identifier forop
is also defined as
named individual

sample identifierc back to ToC or Class ToC

IRI: http://purl.org/beat-covid/lco#record_id

has super-classes
identifierc
is in domain of
is identifier forop
is disjoint with
beat-covid identifierc, clinical identifierc
is also defined as
named individual

samplingc back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_001049

has super-classes
processc
is in domain of
has attributeop, has inputop, has outputop, has targetop, starts duringop
is in range of
is realized inop, was informed byop
is disjoint with
assayc, medical screeningc
is also defined as
named individual

scalec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/NCIT_C25664

has super-classes
information content entityc
is in domain of
has maximal valuedp, has minimal valuedp
is in range of
has scaleop

standardc back to ToC or Class ToC

IRI: http://purl.org/dc/terms/Standard

has super-classes
information content entityc
has sub-classes
protocolc

subject rolec back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_000883

has super-classes
rolec
is in domain of
is realized inop, located inop
is in range of
denotesop, has roleop, is related toop

unsupportedc back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_000992

has super-classes
qualityc
is in range of
is associated withop
is disjoint with
realc, positivec, negativec, neverc, alwaysc, phenotypec
is also defined as
named individual

version labelc back to ToC or Class ToC

IRI: http://semanticscience.org/resource/SIO_000653

has super-classes
information content entityc
is in range of
has versionop

Object Properties

conforms toop back to ToC or Object Property ToC

IRI: http://purl.org/dc/terms/conformsTo

has super-properties
top object property
has domain
assayc
has range
protocolc
is also defined as
named individual

denotesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000219

has super-properties
top object property
has domain
donor registry identifierc
beat-covid identifierc
clinical identifierc
identifierc
has range
donor rolec
rolec
patient rolec
subject rolec
is also defined as
named individual

has attributeop back to ToC or Object Property ToC

IRI: http://semanticscience.org/resource/SIO_000008

has super-properties
is related toop
has sub-properties
has measurement valueop, has qualityop, has roleop, has unitop
has domain
assayc
medical screeningc
samplingc
has range
datec
is also defined as
named individual

has bioassay typeop back to ToC or Object Property ToC

IRI: http://www.bioassayontology.org/bao#BAO_0002854

has super-properties
top object property
has domain
measurement datumc
has range
assayc
is also defined as
named individual

has inputop back to ToC or Object Property ToC

IRI: http://semanticscience.org/resource/SIO_000230

has super-properties
has participantop
has sub-properties
has targetop
has domain
assayc
medical screeningc
samplingc
has range
measurement datumc
personc
patient rolec
samplec
is also defined as
named individual

has measurement valueop back to ToC or Object Property ToC

IRI: http://semanticscience.org/resource/SIO_000216

has super-properties
has attributeop
has domain
proteinc
has range
measurement datumc
is also defined as
named individual

has outputop back to ToC or Object Property ToC

IRI: http://semanticscience.org/resource/SIO_000229

has super-properties
has participantop
has domain
assayc
medical screeningc
samplingc
has range
measurement datumc
material entityc
samplec
is also defined as
named individual

has participantop back to ToC or Object Property ToC

IRI: http://semanticscience.org/resource/SIO_000132

has super-properties
is related toop
has sub-properties
has inputop, has outputop
has domain
assayc
has range
devicec
is also defined as
named individual

has qualityop back to ToC or Object Property ToC

IRI: http://semanticscience.org/resource/SIO_000217

has super-properties
has attributeop
is also defined as
named individual

has roleop back to ToC or Object Property ToC

IRI: http://semanticscience.org/resource/SIO_000228

has characteristics: inverse functional

has super-properties
has attributeop
has domain
personc
has range
donor rolec
rolec
patient rolec
subject rolec
is also defined as
named individual

has scaleop back to ToC or Object Property ToC

IRI: http://www.ontology-of-units-of-measure.org/resource/om-2/hasScale

has domain
evaluation methodc
has range
scalec

has targetop back to ToC or Object Property ToC

IRI: http://semanticscience.org/resource/SIO_000291

has super-properties
has inputop
has domain
assayc
medical screeningc
samplingc
has range
material entityc
personc
organc
proteinc
is also defined as
named individual

has unitop back to ToC or Object Property ToC

IRI: http://semanticscience.org/resource/SIO_000221

has characteristics: functional

has super-properties
has attributeop
has domain
measurement datumc
has range
measurement unit labelc
is also defined as
named individual

has versionop back to ToC or Object Property ToC

IRI: http://purl.org/dc/terms/hasVersion

has domain
evaluation methodc
has range
version labelc

is associated withop back to ToC or Object Property ToC

IRI: http://semanticscience.org/resource/SIO_001403

has super-properties
is related toop
has domain
diagnosisc
has range
realc
unsupportedc
positivec
negativec
neverc
alwaysc
is also defined as
named individual

is attribute ofop back to ToC or Object Property ToC

IRI: http://semanticscience.org/resource/SIO_000011

has super-properties
is related toop
has sub-properties
is identifier forop
has domain
diagnosisc
has range
personc
is also defined as
named individual

is encoded byop back to ToC or Object Property ToC

IRI: http://semanticscience.org/resource/SIO_010079

has super-properties
is related toop
has domain
proteinc
has range
genec
is also defined as
named individual

is identifier forop back to ToC or Object Property ToC

IRI: http://semanticscience.org/resource/SIO_000672

has super-properties
is attribute ofop
has domain
sample identifierc
identifierc
has range
samplec
is also defined as
named individual

is realized inop back to ToC or Object Property ToC

IRI: http://semanticscience.org/resource/SIO_000356

has super-properties
is related toop
has domain
donor rolec
rolec
patient rolec
subject rolec
has range
assayc
processc
medical screeningc
samplingc
is also defined as
named individual

is related toop back to ToC or Object Property ToC

IRI: http://semanticscience.org/resource/SIO_000001

has characteristics: symmetric

has sub-properties
has attributeop, has participantop, is associated withop, is attribute ofop, is encoded byop, is realized inop, measured atop, refers toop
has domain
agec
has range
subject rolec

located inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0001025

has characteristics: transitive

has super-properties
top object property
has domain
subject rolec
has range
healthcare facilityc
institutec
is also defined as
named individual

measured atop back to ToC or Object Property ToC

IRI: http://semanticscience.org/resource/SIO_000793

has super-properties
is related toop
has domain
measurement datumc
has range
datec
is also defined as
named individual

part ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000050

has characteristics: transitive, reflexive

has super-properties
top object property
has domain
healthcare facilityc
organc
proteinc
has range
personc
institutec
is also defined as
named individual

refers toop back to ToC or Object Property ToC

IRI: http://semanticscience.org/resource/SIO_000628

has super-properties
is related toop
has domain
measurement datumc
assayc
realizable entityc
medical screeningc
has range
beat-covid identifierc
clinical identifierc
organc
proteinc
phenotypec
is also defined as
named individual

starts duringop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002091

has super-properties
top object property
has domain
samplingc
has range
orderc
is also defined as
named individual

was informed byop back to ToC or Object Property ToC

IRI: http://www.w3.org/ns/prov#wasInformedBy

has super-properties
top object property
has domain
assayc
medical screeningc
has range
assayc
samplingc
is also defined as
named individual

Data Properties

datedp back to ToC or Data Property ToC

IRI: http://purl.org/dc/terms/date

has super-properties
top data property
has domain
realizable entityc
samplec
has range
date time
is also defined as
named individual

has maximal valuedp back to ToC or Data Property ToC

IRI: http://purl.obolibrary.org/obo/LABO_0000119

has super-properties
has valuedp
has domain
scalec
has range
literal
real

has minimal valuedp back to ToC or Data Property ToC

IRI: http://purl.obolibrary.org/obo/LABO_0000118

has super-properties
has valuedp
has domain
scalec
has range
literal
real

has valuedp back to ToC or Data Property ToC

IRI: http://semanticscience.org/resource/SIO_000300

has characteristics: functional

has super-properties
top data property
has sub-properties
has maximal valuedp, has minimal valuedp
has domain
measurement datumc
samplec
has range
literal
real
is also defined as
named individual

identifierdp back to ToC or Data Property ToC

IRI: http://purl.org/dc/terms/identifier

has super-properties
top data property
has range
literal
is also defined as
named individual

labeldp back to ToC or Data Property ToC

IRI: http://www.w3.org/2000/01/rdf-schema#label

has super-properties
top data property
is also defined as
named individual

Named Individuals

has agentni back to ToC or Named Individual ToC

IRI: http://semanticscience.org/resource/SIO_000139

has facts
labeldp "has agent"

is base forni back to ToC or Named Individual ToC

IRI: http://semanticscience.org/resource/SIO_000642

has facts
labeldp "is base for"@en

medical procedureni back to ToC or Named Individual ToC

IRI: http://semanticscience.org/resource/SIO_001024

has facts
labeldp "medical procedure"@en

Annotation Properties

contributorap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/contributor

creatorap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/creator

descriptionap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/description

identifierap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/identifier

issuedap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/issued

licenseap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/license

modifiedap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/modified

rightsap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/rights

titleap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/title

General Axioms

All Disjoint Classes back to ToC

assayc, medical screeningc, samplingc

All Disjoint Classes back to ToC

beat-covid identifierc, clinical identifierc, sample identifierc

All Disjoint Classes back to ToC

realc, unsupportedc, positivec, negativec, neverc, alwaysc, phenotypec

Namespace Declarations back to ToC

default namespace
http://purl.org/beat-covid/lco.owl
bao
http://www.bioassayontology.org/bao#
beat-covid
http://purl.org/beat-covid/
dc
http://purl.org/dc/elements/1.1/
dct
http://purl.org/dc/terms/
lco
http://purl.org/beat-covid/lco#
obo
http://purl.obolibrary.org/obo/
om-2
http://www.ontology-of-units-of-measure.org/resource/om-2/
orcid-org
http://orcid.org/
owl
http://www.w3.org/2002/07/owl#
prov
http://www.w3.org/ns/prov#
rdf
http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs
http://www.w3.org/2000/01/rdf-schema#
repr
https://w3id.org/reproduceme#
sio
http://semanticscience.org/resource/
v1-0
http://purl.org/beat-covid/lco/v1.0/
xsd
http://www.w3.org/2001/XMLSchema#

This HTML document was obtained by processing the OWL ontology source code through LODE, Live OWL Documentation Environment, developed by Silvio Peroni.